Sample Collection and Preparation
To ensure the highest quality and most reliable results, it is crucial to provide a high-quality sample.
Depending on the panel you choose, different types of samples should be provided.
For our genosmart DX SOLID panels, we accept formalin-fixed paraffin-embedded (FFPE) specimens, including cut slide specimens.
- Use standard fixation methods to preserve nucleic acid integrity. 10% neutral-buffered formalin for 6–72 hours is industry standard. DO NOT use other fixatives (Bouins, B5, AZF, Holland’s).
- Do not decalcify.
Sample Size
- We accept FFPE blocks accompanied by a H&E stained slide
- 10 unstained 5µm slides accompanied by a H&E stained slide with at least 25 mm2 surface area
- We accept purified DNA as well. The DNA amount should be 500 ng (min. 10 ng/µl).
Tumor content
- Ideal tumor content is >30%
- We provide validated results >20%
- Successful sequencing and analysis are possible below 20% tumor content, but in these cases, we cannot guarantee the reproducibility of the results.
For our genoSmart DX – Plasma panels we, accept properly collected and stored peripheral blood plasma specimens.
Accurate analysis of cell-free DNA requires proper collection techniques and handling of the sample. Failure in these can compromise results by diluting cell-free DNA with DNA from white blood cell lysis.
Sample collection tubes
- We accept peripheral blood drawn in STRECK DNA BCT tubes (Cell-Free DNA BCT RUO & CE | Streck) or PAXgene Blood ccfDNA Tubes PAXgene Blood ccfDNA Tubes (100) (qiagen.com).
- Please follow the instructions provided by the manufacturer.
- For each PLASMA panel, ideally 2 tubes (8.5 ml sample / tube) are needed for successful ccfDNA isolation.
PLEASE KEEP IN MIND: Temperature is important. Keep at room temperature (39-95°F, 4-35°C). DO NOT FREEZE.